3B7O Hydrolase date Oct 31, 2007
title Crystal Structure Of The Human Tyrosine Phosphatase Shp2 (Pt An Accessible Active Site
authors E.Ugochukwu, A.Barr, A.Patel, O.King, F.Niesen, E.Salah, P.Savitsk E.S.Pilka, J.Elkins, C.H.Arrowsmith, J.Weigelt, A.M.Edwards, F.V S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 11
Chain: A
Fragment: 'Residues 237-529 (Isoform 2)'
Synonym: Protein-Tyrosine Phosphatase 2c, Ptp-2c, Ptp-1d, S Sh-Ptp2, Shp-2, Shp2;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn11, Ptp2c, Shptp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.170 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.813 86.496 166.555 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MLT enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3b7o.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3B7O
  • CSU: Contacts of Structural Units for 3B7O
  • Likely Quarternary Molecular Structure file(s) for 3B7O
  • Structure Factors (627 Kb)
  • Retrieve 3B7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B7O from S2C, [Save to disk]
  • Re-refined 3b7o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B7O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B7O, from MSDmotif at EBI
  • Fold representative 3b7o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b7o] [3b7o_A]
  • SWISS-PROT database: [Q06124]
  • Domain organization of [PTN11_HUMAN] by SWISSPFAM
  • Domain found in 3B7O: [PTPc ] by SMART
  • Alignments of the sequence of 3B7O with the sequences similar proteins can be viewed for 3B7O's classification [PTN11_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PTN11_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3B7O
  • Community annotation for 3B7O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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