3B8Z	Hydrolase	date	Nov 02, 2007
title	High Resolution Crystal Structure Of The Catalytic Domain Of (Aggrecanase-2)
authors	H.S.Shieh, J.M.Williams, K.J.Mathis, M.D.Tortorella, A.Tomassel
compound		source
Molecule: Protein Adamts-5 Chain: A, B Fragment: Catalytic Domain Synonym: A Disintegrin And Metalloproteinase With Thrombosp Motifs 5; Adam-Ts 5; Adam-Ts5; Aggrecanase-2; Admp-2; Adam- Ec: 3.4.24.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Adamts5, Adamts11, Admp2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Mon208(W3110,Rpoh358,Laciq,Ompt:: Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppha79257
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.057 44.487 76.380 90.00 90.07 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	294, CA, ZN	enzyme	Hydrolase E.C.3.4.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	High resolution crystal structure of the catalytic domain of ADAMTS-5 (aggrecanase-2)., Shieh HS, Mathis KJ, Williams JM, Hills RL, Wiese JF, Benson TE, Kiefer JR, Marino MH, Carroll JN, Leone JW, Malfait AM, Arner EC, Tortorella MD, Tomasselli A, J Biol Chem. 2007 Nov 8;. PMID:17991750

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (3b8z.pdb1.gz) 40 Kb Biological Unit Coordinates (3b8z.pdb2.gz) 40 Kb LPC: Ligand-Protein Contacts for 3B8Z CSU: Contacts of Structural Units for 3B8Z Likely Quarternary Molecular Structure file(s) for 3B8Z Structure Factors (497 Kb) Retrieve 3B8Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B8Z from S2C, [Save to disk] Re-refined 3b8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B8Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B8Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B8Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b8z_B] [3b8z] [3b8z_A] SWISS-PROT database: [Q9UNA0] Domain organization of [ATS5_HUMAN] by SWISSPFAM

Other resources with information on 3B8Z

Community annotation for 3B8Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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