3BD9	Transferase	date	Nov 14, 2007
title	Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
authors	D.Xu, A.F.Moon, D.Song, J.Liu, L.C.Pedersen
compound		source
Molecule: Heparan Sulfate Glucosamine 3-O-Sulfotransferase Chain: A Synonym: Heparan Sulfate D-Glucosaminyl 3-O-Sulfotransferas Heparan Sulfate 3-O-Sulfotransferase 5, H3-Ost-5; Ec: 2.8.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hs3st5, 3ost5, Hs3ost5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Chap-Origamib Expression_system_vector_type: Pet15b Expression_system_plasmid: Pet15b
symmetry	Space Group: P 43 21 2	R_factor 0.203 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.270 59.270 173.957 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	A3P	enzyme	Transferase E.C.2.8.2.23 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Engineering sulfotransferases to modify heparan sulfate., Xu D, Moon AF, Song D, Pedersen LC, Liu J, Nat Chem Biol. 2008 Mar;4(3):200-2. Epub 2008 Jan 27. PMID:18223645

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3bd9.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3BD9 CSU: Contacts of Structural Units for 3BD9 Likely Quarternary Molecular Structure file(s) for 3BD9 Structure Factors (180 Kb) Retrieve 3BD9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BD9 from S2C, [Save to disk] Re-refined 3bd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BD9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BD9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BD9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bd9_A] [3bd9] SWISS-PROT database: [Q8IZT8] Domain organization of [HS3S5_HUMAN] by SWISSPFAM

Other resources with information on 3BD9

Community annotation for 3BD9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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