3BHY	Transferase	date	Nov 29, 2007
title	Crystal Structure Of Human Death Associated Protein Kinase 3 In Complex With A Beta-Carboline Ligand
authors	P.Filippakopoulos, P.Rellos, J.Eswaran, O.Fedorov, G.Berridge, F. F.Bracher, K.Huber, A.C.W.Pike, A.Roos, F.Von Delft, C.H.Arrowsm A.M.Edwards, J.Weigelt, S.Knapp, Structural Genomics Consortiu
compound		source
Molecule: Death-Associated Protein Kinase 3 Chain: A Fragment: Protein Kinase Domain: Residues 9-289 Synonym: Dap Kinase 3, Dap-Like Kinase, Dlk, Zip-Kinase Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dapk3, Zipk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)(R3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 1 21 1	R_factor 0.143 R_Free 0.187
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.549 90.680 41.464 90.00 100.45 90.00
method	X-Ray Diffraction	resolution	1.24 Å
ligand	7CP, CL	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	7,8-Dichloro-1-oxo-beta-carbolines as a Versatile Scaffold for the Development of Potent and Selective Kinase Inhibitors with Unusual Binding Modes., Huber K, Brault L, Fedorov O, Gasser C, Filippakopoulos P, Bullock AN, Fabbro D, Trappe J, Schwaller J, Knapp S, Bracher F, J Med Chem. 2012 Jan 12;55(1):403-13. Epub 2012 Jan 3. PMID:22136433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (3bhy.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 3BHY CSU: Contacts of Structural Units for 3BHY Likely Quarternary Molecular Structure file(s) for 3BHY Structure Factors (472 Kb) Retrieve 3BHY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BHY from S2C, [Save to disk] Re-refined 3bhy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BHY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BHY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BHY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bhy] [3bhy_A] SWISS-PROT database: [O43293] Domain organization of [DAPK3_HUMAN] by SWISSPFAM Domain found in 3BHY: [S_TKc ] by SMART

Other resources with information on 3BHY

Community annotation for 3BHY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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