3BJY Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide date
authors Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.
compound source
symmetry
R_factor
R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.41
ligand DCP, DOC, MG, P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase., Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Structure. 2008 Feb;16(2):239-45. PMID:18275815
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3bjy.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 3BJY
  • CSU: Contacts of Structural Units for 3BJY
  • Likely Quarternary Molecular Structure file(s) for 3BJY
  • Structure Factors (223 Kb)
  • Retrieve 3BJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BJY from S2C, [Save to disk]
  • Re-refined 3bjy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BJY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BJY, from MSDmotif at EBI
  • Fold representative 3bjy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bjy_P] [3bjy_A] [3bjy] [3bjy_T]
  • SWISS-PROT database: [P12689]
  • Domain organization of [REV1_YEAST] by SWISSPFAM
  • Other resources with information on 3BJY
  • Community annotation for 3BJY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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