3BJY	Transferase Dna	date	Dec 05, 2007
title	Catalytic Core Of Rev1 In Complex With Dna (Modified Templat And Incoming Nucleotide
authors	D.T.Nair, R.E.Johnson, L.Prakash, S.Prakash, A.K.Aggarwal
compound		source
Molecule: Dna Repair Protein Rev1 Chain: A Fragment: Catalytic Core Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Rev1 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Yeast Expression_system_taxid: 4932 Expression_system_strain: Bj5464 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbj954
Molecule: Dna (5'-D(Dtpdapdap(P) Pdgpdtpdapdgpdgpdgpdgpdapdgpdgpdapdt)-3'); Chain: T Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'- D(Dapdtpdcpdcpdtpdcpdcpdcpdcpdtpdap(Doc))-3'); Chain: P Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.231 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 181.062 199.578 55.677 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.41 Å
ligand	DCP, DOC, MG, P	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase., Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Structure. 2008 Feb;16(2):239-45. PMID:18275815

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (3bjy.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 3BJY CSU: Contacts of Structural Units for 3BJY Likely Quarternary Molecular Structure file(s) for 3BJY Structure Factors (223 Kb) Retrieve 3BJY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BJY from S2C, [Save to disk] Re-refined 3bjy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BJY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BJY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BJY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bjy_P] [3bjy_A] [3bjy] [3bjy_T] SWISS-PROT database: [P12689] Domain organization of [REV1_YEAST] by SWISSPFAM

Other resources with information on 3BJY

Community annotation for 3BJY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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