3BPJ Translation date Dec 18, 2007
title Crystal Structure Of Human Translation Initiation Factor 3, Alpha
authors W.Tempel, L.Nedyalkova, B.Hong, F.Mackenzie, C.H.Arrowsmith, A.M. J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subuni
Chain: A, B, C, D
Fragment: Proteolytic Fragment: Residues 141-220
Synonym: Eukaryotic Translation Initiation Factor 3 Subunit Alpha, Eif3 P35, Eif3j;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif3j, Eif3s1, Pro0391
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.902 62.373 88.056 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand UNX enzyme
note 3BPJ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3bpj.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3bpj.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3BPJ
  • CSU: Contacts of Structural Units for 3BPJ
  • Likely Quarternary Molecular Structure file(s) for 3BPJ
  • Structure Factors (935 Kb)
  • Retrieve 3BPJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BPJ from S2C, [Save to disk]
  • Re-refined 3bpj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BPJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BPJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BPJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bpj_B] [3bpj_C] [3bpj] [3bpj_A] [3bpj_D]
  • SWISS-PROT database: [O75822]
  • Domain organization of [EIF3J_HUMAN] by SWISSPFAM
  • Other resources with information on 3BPJ
  • Community annotation for 3BPJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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