3BQ9 Structural Genomics, Unknown Function date Dec 19, 2007
title Crystal Structure Of Predicted Nucleotide-Binding Protein Fr Idiomarina Baltica Os145
authors Y.Patskovsky, R.Toro, A.J.Meyer, M.Dickey, M.Eberle, J.Koss, C.Gro S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx R Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Predicted Rossmann Fold Nucleotide-Binding Domain Containing Protein;
Chain: A, B
Engineered: Yes
Organism_scientific: Idiomarina Baltica
Organism_taxid: 314276
Strain: Os145
Gene: Os145_13019
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 2
R_factor 0.210 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.415 171.857 57.362 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, SO4 enzyme
Gene OS145
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (3bq9.pdb1.gz) 312 Kb
  • LPC: Ligand-Protein Contacts for 3BQ9
  • CSU: Contacts of Structural Units for 3BQ9
  • Likely Quarternary Molecular Structure file(s) for 3BQ9
  • Structure Factors (2018 Kb)
  • Retrieve 3BQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BQ9 from S2C, [Save to disk]
  • Re-refined 3bq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BQ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BQ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bq9_A] [3bq9] [3bq9_B]
  • SWISS-PROT database: [A3WM10]
  • Domain organization of [A3WM10_9GAMM] by SWISSPFAM
  • Other resources with information on 3BQ9
  • Community annotation for 3BQ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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