3C5V Hydrolase date Feb 01, 2008
title Pp2a-Specific Methylesterase Apo Form (Pme)
authors Y.Xing, Z.Li, Y.Chen, J.Stock, P.D.Jeffrey, Y.Shi
compound source
Molecule: Protein Phosphatase Methylesterase 1
Chain: A
Synonym: Pme-1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppme1, Pme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.183 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.512 82.512 90.843 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural mechanism of demethylation and inactivation of protein phosphatase 2A., Xing Y, Li Z, Chen Y, Stock JB, Jeffrey PD, Shi Y, Cell. 2008 Apr 4;133(1):154-63. PMID:18394995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3c5v.pdb1.gz) 51 Kb
  • CSU: Contacts of Structural Units for 3C5V
  • Likely Quarternary Molecular Structure file(s) for 3C5V
  • Structure Factors (180 Kb)
  • Retrieve 3C5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C5V from S2C, [Save to disk]
  • Re-refined 3c5v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C5V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c5v_A] [3c5v]
  • SWISS-PROT database: [Q9Y570]
  • Domain organization of [PPME1_HUMAN] by SWISSPFAM
    • Other resources with information on 3C5V
  • Community annotation for 3C5V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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