3C5W Hydrolase date Feb 01, 2008
title Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Enzyme
authors Y.Xing, Z.Li, Y.Chen, J.Stock, P.D.Jeffrey, Y.Shi
compound source
Molecule: Pp2a A Subunit
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pp2a C Subunit
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector: Baculovirus

Molecule: Pp2a-Specific Methylesterase Pme-1
Chain: P
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.292 54.839 125.146 90.00 110.87 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


C


P


Primary referenceStructural mechanism of demethylation and inactivation of protein phosphatase 2A., Xing Y, Li Z, Chen Y, Stock JB, Jeffrey PD, Shi Y, Cell. 2008 Apr 4;133(1):154-63. PMID:18394995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3c5w.pdb1.gz) 129 Kb
  • CSU: Contacts of Structural Units for 3C5W
  • Likely Quarternary Molecular Structure file(s) for 3C5W
  • Structure Factors (172 Kb)
  • Retrieve 3C5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C5W from S2C, [Save to disk]
  • Re-refined 3c5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C5W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C5W, from MSDmotif at EBI
  • Fold representative 3c5w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c5w_P] [3c5w_C] [3c5w_A] [3c5w]
  • SWISS-PROT database: [P30153] [P67775] [Q9Y570]
  • Domain organization of [2AAA_HUMAN] [PP2AA_HUMAN] [PPME1_HUMAN] by SWISSPFAM
  • Domain found in 3C5W: [PP2Ac ] by SMART
  • Other resources with information on 3C5W
  • Community annotation for 3C5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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