3CI0 Protein Transport date Mar 10, 2008
title The Crystal Structure Of The Gspk-Gspi-Gspj Complex From Enterotoxigenic Escherichia Coli Type 2 Secretion System
authors K.V.Korotkov, W.G.J.Hol
compound source
Molecule: Pseudopilin Gspi
Chain: I
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: H10407
Gene: Gspi
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf-Nt

Molecule: Pseudopilin Gspj
Chain: J
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: H10407
Gene: Gspj
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf-22b

Molecule: Pseudopilin Gspk
Chain: K
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: H10407
Gene: Gspk
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf-Nt
symmetry Space Group: P 41 21 2
R_factor 0.192 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.118 96.118 108.436 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, CL, MSE enzyme
note 3CI0 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
I


J


K


Primary referenceStructure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system., Korotkov KV, Hol WG, Nat Struct Mol Biol. 2008 May;15(5):462-8. Epub 2008 Apr 27. PMID:18438417
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3ci0.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3CI0
  • CSU: Contacts of Structural Units for 3CI0
  • Likely Quarternary Molecular Structure file(s) for 3CI0
  • Structure Factors (191 Kb)
  • Retrieve 3CI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CI0 from S2C, [Save to disk]
  • Re-refined 3ci0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CI0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CI0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ci0_K] [3ci0] [3ci0_J] [3ci0_I]
  • SWISS-PROT database: [Q8VLK7] [Q8VPC2] [Q8VPC3]
  • Domain organization of [Q8VLK7_ECOLX] [Q8VPC2_ECOLX] [Q8VPC3_ECOLX] by SWISSPFAM
  • Other resources with information on 3CI0
  • Community annotation for 3CI0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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