3D5T	Oxidoreductase	date	May 16, 2008
title	Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Malate Dehydrogenase Chain: A, B, C, D Ec: 1.1.1.37 Engineered: Yes		Organism_scientific: Burkholderia Pseudomallei Organism_taxid: 320372 Strain: 1710b Gene: Mdh, Burps1710b_a0795 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: P 21 21 21	R_factor 0.178 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.387 79.608 288.874 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.51 Å
ligand	MG, NA	enzyme	Oxidoreductase E.C.1.1.1.37 BRENDA
Gene	BURPS1710B
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk] Biological Unit Coordinates (3d5t.pdb1.gz) 99 Kb Biological Unit Coordinates (3d5t.pdb2.gz) 100 Kb LPC: Ligand-Protein Contacts for 3D5T CSU: Contacts of Structural Units for 3D5T Likely Quarternary Molecular Structure file(s) for 3D5T Structure Factors (734 Kb) Retrieve 3D5T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D5T from S2C, [Save to disk] Re-refined 3d5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D5T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D5T

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D5T, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d5t_B] [3d5t_D] [3d5t_A] [3d5t_C] [3d5t] SWISS-PROT database: [Q3JKE9] Domain organization of [MDH_BURP1] by SWISSPFAM

Other resources with information on 3D5T

Community annotation for 3D5T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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