3DC5	Oxidoreductase	date	Jun 03, 2008
title	Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans
authors	C.H.Trinh, T.Hunter, E.E.Stewart, S.E.V.Phillips, G.J.Hunter
compound		source
Molecule: Superoxide Dismutase [Mn] 2 Chain: A, C Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_common: Nematode Organism_taxid: 6239 Gene: Sod-3, C08a9.1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Ox326a Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptrc-99a
symmetry	Space Group: P 41 21 2	R_factor 0.189 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.780 81.780 136.031 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	MLI, MN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, C
Primary reference	Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from Caenorhabditis elegans., Trinh CH, Hunter T, Stewart EE, Phillips SE, Hunter GJ, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Dec 1;64(Pt, 12):1110-4. Epub 2008 Nov 28. PMID:19052361

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3dc5.pdb1.gz) 137 Kb LPC: Ligand-Protein Contacts for 3DC5 CSU: Contacts of Structural Units for 3DC5 Likely Quarternary Molecular Structure file(s) for 3DC5 Structure Factors (380 Kb) Retrieve 3DC5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DC5 from S2C, [Save to disk] Re-refined 3dc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DC5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DC5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DC5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dc5_C] [3dc5_A] [3dc5] SWISS-PROT database: [P41977] Domain organization of [SODM2_CAEEL] by SWISSPFAM

Other resources with information on 3DC5

Community annotation for 3DC5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---