OCA Atlas for 3DD9

3DD9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
F, G, H, B, C, E, D, A	protein serine/threonine kin...

Primary reference

The intrinsically disordered domain of the antitoxin Phd chaperones the toxin Doc against irreversible inactivation and misfolding., De Gieter S, Konijnenberg A, Talavera A, Butterer A, Haesaerts S, De Greve H, Sobott F, Loris R, Garcia-Pino A, J Biol Chem. 2014 Dec 5;289(49):34013-23. doi: 10.1074/jbc.M114.572396. Epub 2014, Oct 16. PMID:25326388

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]

Biological Unit Coordinates (3dd9.pdb1.gz) 36 Kb

Biological Unit Coordinates (3dd9.pdb2.gz) 36 Kb

Biological Unit Coordinates (3dd9.pdb3.gz) 34 Kb

Biological Unit Coordinates (3dd9.pdb4.gz) 36 Kb

CSU: Contacts of Structural Units for 3DD9

Likely Quarternary Molecular Structure file(s) for 3DD9

Structure Factors (631 Kb)

Retrieve 3DD9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DD9 from S2C, [Save to disk]

Re-refined 3dd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DD9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dd9] [3dd9_A] [3dd9_B] [3dd9_C] [3dd9_D] [3dd9_E] [3dd9_F] [3dd9_G] [3dd9_H]

SWISS-PROT database: [Q06259]

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