3DIW Signaling Protein Cell Adhesion date Jun 21, 2008
title C-Terminal Beta-Catenin Bound Tip-1 Structure
authors Y.Shen
compound source
Molecule: Tax1-Binding Protein 3
Chain: A, B
Synonym: Tax Interaction Protein 1, Tip-1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Decameric Peptide Form Catenin Beta-1
Chain: C, D
Fragment: C-Terminal Domain, Unp Residues 772-781
Synonym: Beta-Catenin
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.098 93.571 107.724 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis of beta-Catenin Recognition by Tax-interacting Protein-1., Zhang J, Yan X, Shi C, Yang X, Guo Y, Tian C, Long J, Shen Y, J Mol Biol. 2008 Sep 21. PMID:18835279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3diw.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3diw.pdb2.gz) 21 Kb
  • CSU: Contacts of Structural Units for 3DIW
  • Likely Quarternary Molecular Structure file(s) for 3DIW
  • Structure Factors (221 Kb)
  • Retrieve 3DIW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DIW from S2C, [Save to disk]
  • Re-refined 3diw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DIW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DIW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DIW, from MSDmotif at EBI
  • Fold representative 3diw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3diw_A] [3diw] [3diw_D] [3diw_C] [3diw_B]
  • SWISS-PROT database: [P35222] [Q9DBG9]
  • Domain organization of [CTNB1_HUMAN] [TX1B3_MOUSE] by SWISSPFAM
  • Domain found in 3DIW: [PDZ ] by SMART
  • Alignments of the sequence of 3DIW with the sequences similar proteins can be viewed for 3DIW's classification [CTNB1_HUMAN] [TX1B3_MOUSE] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CTNB1_HUMAN] [TX1B3_MOUSE] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3DIW
  • Community annotation for 3DIW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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