3DM5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, GDP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of SRP54 and SRP19, the two proteins that organize the ribonucleic core of the signal recognition particle from Pyrococcus furiosus., Egea PF, Napetschnig J, Walter P, Stroud RM, PLoS ONE. 2008;3(10):e3528. Epub 2008 Oct 27. PMID:18953414
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3dm5.pdb1.gz) 265 Kb
  • Biological Unit Coordinates (3dm5.pdb2.gz) 134 Kb
  • Biological Unit Coordinates (3dm5.pdb3.gz) 134 Kb
  • Biological Unit Coordinates (3dm5.pdb4.gz) 68 Kb
  • Biological Unit Coordinates (3dm5.pdb5.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3DM5
  • CSU: Contacts of Structural Units for 3DM5
  • Likely Quarternary Molecular Structure file(s) for 3DM5
  • Structure Factors (420 Kb)
  • Retrieve 3DM5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DM5 from S2C, [Save to disk]
  • Re-refined 3dm5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DM5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dm5] [3dm5_A] [3dm5_B]
  • SWISS-PROT database: [Q8U070]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domains found in 3DM5: [AAA] [SRP54] [SRP54_N ] by SMART

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