3DVU	Viral Protein Apoptosis	date	Jul 20, 2008
title	Crystal Structure Of The Complex Of Murine Gamma-Herpesvirus Homolog M11 And The Beclin 1 Bh3 Domain
authors	S.Sinha
compound		source
Molecule: V-Bcl-2 Chain: A, B Fragment: Residues 2-136 Synonym: Bcl-2 Homolog, Gene 16?, M11 Engineered: Yes		Organism_scientific: Murid Herpesvirus 4 Organism_common: Muhv-4 Organism_taxid: 33708 Gene: V-Bcl-2, Gammahv.M11, M11 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21(D+)
Molecule: Beclin-1 Chain: C, D Fragment: Bh3 Domain, Residues 105-130 Synonym: Coiled-Coil Myosin-Like Bcl2-Interacting Protein, Gt197; Engineered: Yes		Synthetic: Yes Other_details: Peptide Synthesis; The Peptide Corresponding Beclin 1 Residues 105-130 Was Chemically Synthesized.
symmetry	Space Group: P 1 21 1	R_factor 0.226 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.424 53.134 64.059 90.00 96.67 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Molecular basis of the regulation of Beclin 1-dependent autophagy by the gamma-herpesvirus 68 Bcl-2 homolog M11., Sinha S, Colbert CL, Becker N, Wei Y, Levine B, Autophagy. 2008 Nov 18;4(8). PMID:18797192

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3dvu.pdb1.gz) 26 Kb Biological Unit Coordinates (3dvu.pdb2.gz) 27 Kb CSU: Contacts of Structural Units for 3DVU Likely Quarternary Molecular Structure file(s) for 3DVU Structure Factors (346 Kb) Retrieve 3DVU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DVU from S2C, [Save to disk] Re-refined 3dvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DVU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DVU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DVU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dvu_A] [3dvu_D] [3dvu_C] [3dvu_B] [3dvu] SWISS-PROT database: [Q14457] [P89884] Domain organization of [BECN1_HUMAN] [P89884_MHV68] by SWISSPFAM

Other resources with information on 3DVU

Community annotation for 3DVU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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