3DYF		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ACT, BME, IPR, MG, MPD, NI9	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Lipophilic bisphosphonates as dual farnesyl/geranylgeranyl diphosphate synthase inhibitors: an X-ray and NMR investigation., Zhang Y, Cao R, Yin F, Hudock MP, Guo RT, Krysiak K, Mukherjee S, Gao YG, Robinson H, Song Y, No JH, Bergan K, Leon A, Cass L, Goddard A, Chang TK, Lin FY, Van Beek E, Papapoulos S, Wang AH, Kubo T, Ochi M, Mukkamala D, Oldfield E, J Am Chem Soc. 2009 Apr 15;131(14):5153-62. PMID:19309137

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (3dyf.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 3DYF CSU: Contacts of Structural Units for 3DYF Likely Quarternary Molecular Structure file(s) for 3DYF Structure Factors (268 Kb) Retrieve 3DYF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DYF from S2C, [Save to disk] Re-refined 3dyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DYF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dyf] [3dyf_A] [3dyf_B] SWISS-PROT database: [Q86C09]

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