3DYT	Transport Protein	date	Jul 28, 2008
title	Crystal Structure Of Snx9px-Bar (230-595), C2221
authors	Q.Wang, H.Y.K.Kaan, H.Sondermann
compound		source
Molecule: Sorting Nexin-9 Chain: A Fragment: Unp Residues 230-595 Synonym: Sh3 And Px Domain-Containing Protein 1, Protein Sdp1, Sh3 And Px Domain-Containing Protein 3a; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Snx9, Sh3px1, Sh3pxd3a Expression_system: Escherichia Coli Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 2 2 21	R_factor 0.217 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.000 144.005 103.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.08 Å
ligand	MSE, SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and plasticity of Endophilin and Sorting Nexin 9., Wang Q, Kaan HY, Hooda RN, Goh SL, Sondermann H, Structure. 2008 Oct 8;16(10):1574-87. PMID:18940612

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (3dyt.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 3DYT CSU: Contacts of Structural Units for 3DYT Likely Quarternary Molecular Structure file(s) for 3DYT Structure Factors (470 Kb) Retrieve 3DYT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DYT from S2C, [Save to disk] Re-refined 3dyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DYT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DYT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DYT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dyt_A] [3dyt] SWISS-PROT database: [Q9Y5X1] Domain organization of [SNX9_HUMAN] by SWISSPFAM Domain found in 3DYT: [PX ] by SMART

Other resources with information on 3DYT

Community annotation for 3DYT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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