3DYU	Transport Protein	date	Jul 28, 2008
title	Crystal Structure Of Snx9px-Bar (230-595), H32
authors	Q.Wang, H.Y.K.Kaan, H.Sondermann
compound		source
Molecule: Sorting Nexin-9 Chain: A, B, C Fragment: Unp Residues 230-595 Synonym: Sh3 And Px Domain-Containing Protein 1, Protein Sd And Px Domain-Containing Protein 3a; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Snx9, Sh3px1, Sh3pxd3a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproexhtb
symmetry	Space Group: H 3 2	R_factor 0.388 R_Free 0.403
crystal cell	length a length b length c angle alpha angle beta angle gamma 131.765 131.765 569.072 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	4.10 Å
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure and plasticity of Endophilin and Sorting Nexin 9., Wang Q, Kaan HY, Hooda RN, Goh SL, Sondermann H, Structure. 2008 Oct 8;16(10):1574-87. PMID:18940612

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (3dyu.pdb1.gz) 101 Kb Biological Unit Coordinates (3dyu.pdb2.gz) 101 Kb CSU: Contacts of Structural Units for 3DYU Likely Quarternary Molecular Structure file(s) for 3DYU Structure Factors (131 Kb) Retrieve 3DYU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DYU from S2C, [Save to disk] Re-refined 3dyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DYU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3DYU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3DYU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dyu_B] [3dyu_C] [3dyu_A] [3dyu] SWISS-PROT database: [Q9Y5X1] Domain organization of [SNX9_HUMAN] by SWISSPFAM Domain found in 3DYU: [PX ] by SMART

Other resources with information on 3DYU

Community annotation for 3DYU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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