3E0J Transferase date Jul 31, 2008
title X-Ray Structure Of The Complex Of Regulatory Subunits Of Hum Polymerase Delta
authors A.G.Baranovskiy, N.D.Babayeva, Y.I.Pavlov, D.G.Vassylyev, T.H.Ta
compound source
Molecule: Dna Polymerase Subunit Delta-2
Chain: A, C, E, G
Synonym: Dna Polymerase Subunit Delta P50
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna Polymerase Subunit Delta-3
Chain: B, D, F, H
Fragment: Residues 1-144
Synonym: Dna Polymerase Subunit Delta P66
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.257 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.128 248.535 103.461 90.00 106.94 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceX-ray structure of the complex of regulatory subunits of human DNA polymerase delta., Baranovskiy AG, Babayeva ND, Liston VG, Rogozin IB, Koonin EV, Pavlov YI, Vassylyev DG, Tahirov TH, Cell Cycle. 2008 Oct;7(19):3026-36. Epub 2008 Oct 4. PMID:18818516
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (353 Kb) [Save to disk]
  • Biological Unit Coordinates (3e0j.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (3e0j.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (3e0j.pdb3.gz) 89 Kb
  • Biological Unit Coordinates (3e0j.pdb4.gz) 90 Kb
  • CSU: Contacts of Structural Units for 3E0J
  • Likely Quarternary Molecular Structure file(s) for 3E0J
  • Structure Factors (716 Kb)
  • Retrieve 3E0J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E0J from S2C, [Save to disk]
  • Re-refined 3e0j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E0J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E0J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E0J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e0j_F] [3e0j_A] [3e0j_B] [3e0j_D] [3e0j_C] [3e0j_G] [3e0j_H] [3e0j_E] [3e0j]
  • SWISS-PROT database: [P49005] [Q15054]
  • Domain organization of [DPOD2_HUMAN] [DPOD3_HUMAN] by SWISSPFAM
  • Other resources with information on 3E0J
  • Community annotation for 3E0J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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