3E5Y Transferase date Aug 14, 2008
title Crystal Structure Of Trmh Family Rna Methyltransferase From Burkholderia Pseudomallei
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Trmh Family Rna Methyltransferase
Chain: A, B
Synonym: Rna Methyltransferase, Trmh Family, Group 2
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei 305
Organism_taxid: 425067
Gene: Burps305_4843
Expression_system: Escherichia Coli
Expression_system_vector_type: Ava0421
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.724 80.532 80.882 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene BURPS305
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3e5y.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3E5Y
  • Likely Quarternary Molecular Structure file(s) for 3E5Y
  • Structure Factors (189 Kb)
  • Retrieve 3E5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E5Y from S2C, [Save to disk]
  • Re-refined 3e5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E5Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e5y_B] [3e5y] [3e5y_A]
  • SWISS-PROT database: [A4LJP7]
  • Domain organization of [A4LJP7_BURPS] by SWISSPFAM
  • Other resources with information on 3E5Y
  • Community annotation for 3E5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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