3E8L Hydrolase Inhibitor Hydrolase date Aug 20, 2008
title The Crystal Structure Of The Double-Headed Arrowhead Proteas Inhibitor A In Complex With Two Trypsins
authors R.Bao, C.H.Jiang, C.W.Chi, S.X.Lin, Y.X.Chen
compound source
Molecule: Serine Proteinase Inhibitor A
Chain: C
Fragment: Beta-Trefoil Fold
Engineered: Yes
Organism_scientific: Sagittaria Sagittifolia
Organism_common: Arrowhead
Organism_taxid: 4451
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Cationic Trypsin
Chain: A, B
Synonym: Beta-Trypsin
Ec: 3.4.21.4

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: C 2 2 21
R_factor 0.194 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.634 110.863 152.991 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand ACT, CA, EDO, GOL, NA, PEG, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C
  • endopeptidase inhibitor acti...


  • Primary referenceThe ternary structure of the double-headed arrowhead protease inhibitor API-A complexed with two trypsins reveals a novel reactive site conformation., Bao R, Zhou CZ, Jiang C, Lin SX, Chi CW, Chen Y, J Biol Chem. 2009 Sep 25;284(39):26676-84. Epub 2009 Jul 28. PMID:19640842
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3e8l.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 3E8L
  • CSU: Contacts of Structural Units for 3E8L
  • Likely Quarternary Molecular Structure file(s) for 3E8L
  • Structure Factors (323 Kb)
  • Retrieve 3E8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3E8L from S2C, [Save to disk]
  • Re-refined 3e8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3E8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3E8L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3E8L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3e8l] [3e8l_B] [3e8l_A] [3e8l_C]
  • SWISS-PROT database: [Q7M1P4] [P00760]
  • Domain organization of [Q7M1P4_SAGSA] [TRY1_BOVIN] by SWISSPFAM
  • Domains found in 3E8L: [STI] [Tryp_SPc ] by SMART
  • Other resources with information on 3E8L
  • Community annotation for 3E8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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