3ED5	Structural Genomics, Unknown Function	date	Sep 02, 2008
title	The Crystal Structure Of Yfnb From Bacillus Subtilis Subsp. Str. 168
authors	K.Tan, R.Wu, R.Jedrzejczak, A.Joachimiak, Midwest Center For Str Genomics (Mcsg)
compound		source
Molecule: Yfnb Chain: A Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Strain: Str. 168 Gene: Yfnb, Bsu07330 Expression_system: Escherichia Coli Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg19b
symmetry	Space Group: P 65	R_factor 0.171 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.186 91.186 68.253 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.72 Å
ligand	FMT, MSE	enzyme
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3ed5.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3ED5 CSU: Contacts of Structural Units for 3ED5 Likely Quarternary Molecular Structure file(s) for 3ED5 Structure Factors (498 Kb) Retrieve 3ED5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ED5 from S2C, [Save to disk] Re-refined 3ed5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ED5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ED5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ED5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ed5] [3ed5_A] SWISS-PROT database: [O06480] Domain organization of [YFNB_BACSU] by SWISSPFAM

Other resources with information on 3ED5

Community annotation for 3ED5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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