3EVX	Ligase	date	Oct 13, 2008
title	Crystal Structure Of The Human E2-Like Ubiquitin-Fold Modifi Conjugating Enzyme 1 (Ufc1). Northeast Structural Genomics Target Hr41
authors	F.Forouhar, M.Abashidze, J.Seetharaman, C.K.Ho, H.Janjua, K.Cunni C.Ma, R.Xiao, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, L.Ton J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound		source
Molecule: Ufm1-Conjugating Enzyme 1 Chain: A, B, C, D Synonym: Ubiquitin-Fold Modifier-Conjugating Enzyme 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cgi-126, Hspc155, Ufc1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)+Magic Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: P 1	R_factor 0.233 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.368 64.537 66.422 90.06 89.95 105.18
method	X-Ray Diffraction	resolution	2.54 Å
ligand	MSE, SCN	enzyme
note	3EVX supersedes 2IN1, 3E2G
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway., Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T, J Struct Funct Genomics. 2009 Apr;10(2):127-36. Epub 2008 Dec 20. PMID:19101823

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (3evx.pdb1.gz) 29 Kb Biological Unit Coordinates (3evx.pdb2.gz) 28 Kb Biological Unit Coordinates (3evx.pdb3.gz) 28 Kb Biological Unit Coordinates (3evx.pdb4.gz) 29 Kb LPC: Ligand-Protein Contacts for 3EVX CSU: Contacts of Structural Units for 3EVX Likely Quarternary Molecular Structure file(s) for 3EVX Structure Factors (168 Kb) Retrieve 3EVX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EVX from S2C, [Save to disk] Re-refined 3evx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EVX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EVX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EVX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3evx_B] [3evx_D] [3evx] [3evx_C] [3evx_A] SWISS-PROT database: [Q9Y3C8] Domain organization of [UFC1_HUMAN] by SWISSPFAM

Other resources with information on 3EVX

Community annotation for 3EVX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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