OCA Atlas for 3EWF

3EWF

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACE, ALY, K, MCM, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, B, A

Primary reference

Structural studies of human histone deacetylase 8 and its site-specific variants complexed with substrate and inhibitors., Dowling DP, Gantt SL, Gattis SG, Fierke CA, Christianson DW, Biochemistry. 2008 Dec 23;47(51):13554-63. PMID:19053282

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk]

Biological Unit Coordinates (3ewf.pdb1.gz) 233 Kb

Biological Unit Coordinates (3ewf.pdb2.gz) 62 Kb

Biological Unit Coordinates (3ewf.pdb3.gz) 62 Kb

Biological Unit Coordinates (3ewf.pdb4.gz) 62 Kb

Biological Unit Coordinates (3ewf.pdb5.gz) 62 Kb

LPC: Ligand-Protein Contacts for 3EWF

CSU: Contacts of Structural Units for 3EWF

Likely Quarternary Molecular Structure file(s) for 3EWF

Structure Factors (393 Kb)

Retrieve 3EWF in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3EWF from S2C, [Save to disk]

Re-refined 3ewf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EWF in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ewf] [3ewf_A] [3ewf_B] [3ewf_C] [3ewf_D] [3ewf_I] [3ewf_J] [3ewf_K] [3ewf_L]

SWISS-PROT database: [Q9BY41]

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