3F2D	Transferase Dna	date	Oct 29, 2008
title	Dna Polymerase Polc From Geobacillus Kaustophilus Complex Wi Dgtp, Mn And Zn
authors	D.R.Davies, R.J.Evans, J.M.Bullard, J.Christensen, L.S.Green, J.W W.K.Ribble, N.Janjic, T.C.Jarvis
compound		source
Molecule: 5'-D(Dcpdapdgpdtpdgpdapdgpdapdcpdgpdgp Apdapdcpdc)-3'; Chain: P Engineered: Yes Other_details: Dna Primer Strand		Synthetic: Yes Other_details: Primer Strand Is Synthetic Oligonucleotide
Molecule: 5'-D(Dapdtpdapdapdcpdgpdgpdtpdtpdgpdcp Gpdtpdcpdtpdcpdapdcpdtpdg)-3'; Chain: T Engineered: Yes Other_details: Dna Template Strand		Synthetic: Yes Other_details: Template Strand Is Synthetic Oligonucleotide
Molecule: Geobacillus Kaustophilus Dna Polc Chain: A Fragment: Gkapolc, Delta 1-227, Delta 412-617 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Geobacillus Kaustophilus Organism_taxid: 1462 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.216 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.997 139.479 184.074 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.51 Å
ligand	DGT, MN, PO4, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of PolC reveals unique DNA binding and fidelity determinants., Evans RJ, Davies DR, Bullard JM, Christensen J, Green LS, Guiles JW, Pata JD, Ribble WK, Janjic N, Jarvis TC, Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20695-700. Epub 2008 Dec 23. PMID:19106298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (3f2d.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 3F2D CSU: Contacts of Structural Units for 3F2D Likely Quarternary Molecular Structure file(s) for 3F2D Structure Factors (791 Kb) Retrieve 3F2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F2D from S2C, [Save to disk] Re-refined 3f2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F2D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F2D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F2D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f2d_A] [3f2d_T] [3f2d] [3f2d_P] SWISS-PROT database: [Q5L0J3] Domain organization of [Q5L0J3_GEOKA] by SWISSPFAM Domain found in 3F2D: [POLIIIAc ] by SMART

Other resources with information on 3F2D

Community annotation for 3F2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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