3F59 Structural Protein date Nov 03, 2008
title Crystal Structure Of Zu5-Ank, The Spectrin Binding Region Of Erythroid Ankyrin
authors J.J.Ipsaro, L.Huang, A.Mondragon
compound source
Molecule: Ankyrin-1
Chain: A, B, C, D
Fragment: Zu5-Ank, Spectrin Binding Region Of Human Erythro
Ankyrin: Unp Residues 911-1068
Synonym: Erythrocyte Ankyrin, Ankyrin-R
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Ank1, Ank
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Picante
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
38.040 204.110 43.070 90.00 113.14 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BR enzyme
Primary referenceStructures of the spectrin-ankyrin interaction binding domains., Ipsaro JJ, Huang L, Mondragon A, Blood. 2009 May 28;113(22):5385-93. Epub 2009 Jan 13. PMID:19141864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3f59.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3f59.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (3f59.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (3f59.pdb4.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3F59
  • CSU: Contacts of Structural Units for 3F59
  • Likely Quarternary Molecular Structure file(s) for 3F59
  • Structure Factors (836 Kb)
  • Retrieve 3F59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F59 from S2C, [Save to disk]
  • Re-refined 3f59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F59, from MSDmotif at EBI
  • Fold representative 3f59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f59_B] [3f59] [3f59_C] [3f59_A] [3f59_D]
  • SWISS-PROT database: [P16157]
  • Belongs to the ankyrin (ankyrin) family according to TCDB.
  • Domain organization of [ANK1_HUMAN] by SWISSPFAM
  • Domain found in 3F59: [ZU5 ] by SMART
  • Other resources with information on 3F59
  • Community annotation for 3F59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science