3F7P Structural Protein Cell Adhesion date Nov 10, 2008
title Crystal Structure Of A Complex Between Integrin Beta4 And Plectin
authors J.M.De Pereda
compound source
Molecule: Plectin-1
Chain: A, B
Fragment: Actin-Binding Domain, Residues 1-293
Synonym: Plectin 1c, Pltn, Pcn, Hemidesmosomal Protein 1, Hd1, Plectin-6, Plectin-11;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plec-1 (Isoform 1c), Plec1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Derivative Of Pet15b

Molecule: Integrin Beta-4
Chain: C, D, E
Fragment: Fibronectin Type-III, Residues 1126-1370
Synonym: Gp150
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Derivative Of Pet15b
symmetry Space Group: P 32 2 1
R_factor 0.204 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.250 107.250 203.970 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand CA, EDO, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C, E


Primary referenceStructural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes., de Pereda JM, Lillo MP, Sonnenberg A, EMBO J. 2009 Feb 26. PMID:19242489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7p.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (3f7p.pdb2.gz) 150 Kb
  • Biological Unit Coordinates (3f7p.pdb3.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3F7P
  • CSU: Contacts of Structural Units for 3F7P
  • Likely Quarternary Molecular Structure file(s) for 3F7P
  • Structure Factors (289 Kb)
  • Retrieve 3F7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7P from S2C, [Save to disk]
  • Re-refined 3f7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F7P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F7P, from MSDmotif at EBI
  • Fold representative 3f7p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7p_E] [3f7p_B] [3f7p_A] [3f7p_C] [3f7p] [3f7p_D]
  • SWISS-PROT database: [P16144] [Q15149]
  • Domain organization of [ITB4_HUMAN] [PLEC1_HUMAN] by SWISSPFAM
  • Domains found in 3F7P: [CH] [FN3 ] by SMART
  • Other resources with information on 3F7P
  • Community annotation for 3F7P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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