3FBY Cell Adhesion date Nov 20, 2008
title The Crystal Structure Of The Signature Domain Of Cartilage O Matrix Protein.
authors K.Tan, J.Lawler
compound source
Molecule: Cartilage Oligomeric Matrix Protein
Chain: A, B, C
Fragment: Unp Residues 225-757
Synonym: Comp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Comp, Comp(Cartilage Oligomeric Matrix Protein)
Expression_system: Drosophila
Expression_system_taxid: 7215
Expression_system_strain: Drosophila S2 Cell
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbipv5-His A
symmetry Space Group: P 32 2 1
R_factor 0.202 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
192.242 192.242 145.681 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
ligand CA, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe crystal structure of the signature domain of cartilage oligomeric matrix protein: implications for collagen, glycosaminoglycan and integrin binding., Tan K, Duquette M, Joachimiak A, Lawler J, FASEB J. 2009 Mar 10. PMID:19276170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (3fby.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3fby.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (3fby.pdb3.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3FBY
  • CSU: Contacts of Structural Units for 3FBY
  • Likely Quarternary Molecular Structure file(s) for 3FBY
  • Structure Factors (824 Kb)
  • Retrieve 3FBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FBY from S2C, [Save to disk]
  • Re-refined 3fby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FBY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FBY, from MSDmotif at EBI
  • Fold representative 3fby from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fby_B] [3fby_A] [3fby_C] [3fby]
  • SWISS-PROT database: [P49747]
  • Domain organization of [COMP_HUMAN] by SWISSPFAM
  • Domain found in 3FBY: [EGF ] by SMART
  • Other resources with information on 3FBY
  • Community annotation for 3FBY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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