3FUB	Hormone	date	Jan 14, 2009
title	Crystal Structure Of Gdnf-Gfralpha1 Complex
authors	V.Parkash, A.Goldman
compound		source
Molecule: Gdnf Family Receptor Alpha-1 Chain: A, C Fragment: Sequence Database Residues 145-425 Synonym: Gfr-Alpha-1, Gdnf Receptor Alpha, Gdnfr-Alpha, Tgf Related Neurotrophic Factor Receptor 1, Ret Ligand 1;		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116
Molecule: Glial Cell Line-Derived Neurotrophic Factor Chain: B, D Synonym: Astrocyte-Derived Trophic Factor, Atf, Hgdnf Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gdnf Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: C 1 2 1	R_factor 0.226 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.200 84.100 179.200 90.00 96.10 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	EDO, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Comparison of GFL-GFRalpha complexes: further evidence relating GFL bend angle to RET signalling., Parkash V, Goldman A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt, 6):551-8. Epub 2009 May 23. PMID:19478429

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (3fub.pdb1.gz) 94 Kb Biological Unit Coordinates (3fub.pdb2.gz) 98 Kb LPC: Ligand-Protein Contacts for 3FUB CSU: Contacts of Structural Units for 3FUB Likely Quarternary Molecular Structure file(s) for 3FUB Structure Factors (244 Kb) Retrieve 3FUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FUB from S2C, [Save to disk] Re-refined 3fub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FUB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FUB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fub_D] [3fub_B] [3fub] [3fub_A] [3fub_C] SWISS-PROT database: [P39905] [Q62997] Domain organization of [GDNF_HUMAN] [GFRA1_RAT] by SWISSPFAM Domains found in 3FUB: [GDNF] [TGFB ] by SMART

Other resources with information on 3FUB

Community annotation for 3FUB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---