3G33 Cell Cycle date Feb 01, 2009
title Crystal Structure Of Cdk4cyclin D3
authors T.Takaki, A.Echalier, N.R.Brown, T.Hunt, J.A.Endicott, M.E.M.Nobl
compound source
Molecule: Cell Division Protein Kinase 4
Chain: A, C
Synonym: Cyclin-Dependent Kinase 4, Psk-J3
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk4
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ccnd3 Protein
Chain: B, D
Synonym: Cyclin D3, Isoform Cra_b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnd3, Hcg_16683
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 42 21 2
R_factor 0.281 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.297 141.297 143.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Transferase E.C.2.7.11.22 BRENDA
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • cyclin-dependent protein ser...


  • D, B


    Primary referenceThe structure of CDK4/cyclin D3 has implications for models of CDK activation., Takaki T, Echalier A, Brown NR, Hunt T, Endicott JA, Noble ME, Proc Natl Acad Sci U S A. 2009 Feb 23. PMID:19237555
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (3g33.pdb1.gz) 156 Kb
  • CSU: Contacts of Structural Units for 3G33
  • Likely Quarternary Molecular Structure file(s) for 3G33
  • Structure Factors (1338 Kb)
  • Retrieve 3G33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G33 from S2C, [Save to disk]
  • Re-refined 3g33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G33
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G33, from MSDmotif at EBI
  • Fold representative 3g33 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g33_A] [3g33_C] [3g33_D] [3g33_B] [3g33]
  • SWISS-PROT database: [P30281] [P11802]
  • Domain organization of [CCND3_HUMAN] [CDK4_HUMAN] by SWISSPFAM
  • Domains found in 3G33: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 3G33
  • Community annotation for 3G33 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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