3G9W Cell Adhesion date Feb 15, 2009
title Crystal Structure Of Talin2 F2-F3 In Complex With The Integr Cytoplasmic Tail
authors N.J.Anthis, K.L.Wegener, F.Ye, C.Kim, E.D.Lowe, I.Vakonakis, N.Bat D.R.Critchley, M.H.Ginsberg, I.D.Campbell
compound source
Molecule: Talin-2
Chain: A, B
Fragment: F2-F3 Domain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tln2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151

Molecule: Integrin Beta-1d
Chain: C, D
Fragment: Cytoplasmic Tail
Synonym: Fibronectin Receptor Subunit Beta, Integrin Vla-4 Beta;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.260 108.720 131.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand GOL, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceThe structure of an integrin/talin complex reveals the basis of inside-out signal transduction., Anthis NJ, Wegener KL, Ye F, Kim C, Goult BT, Lowe ED, Vakonakis I, Bate N, Critchley DR, Ginsberg MH, Campbell ID, EMBO J. 2009 Oct 1. PMID:19798053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (3g9w.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3g9w.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3G9W
  • CSU: Contacts of Structural Units for 3G9W
  • Structure Factors (1074 Kb)
  • Retrieve 3G9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G9W from S2C, [Save to disk]
  • Re-refined 3g9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G9W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3G9W, from MSDmotif at EBI
  • Fold representative 3g9w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g9w_C] [3g9w] [3g9w_A] [3g9w_B] [3g9w_D]
  • SWISS-PROT database: [P05556] [Q71LX4]
  • Belongs to the selenoprotein p receptor (selp-receptor) family according to TCDB.
  • Domain organization of [ITB1_HUMAN] [TLN2_MOUSE] by SWISSPFAM
  • Domains found in 3G9W: [B41] [ETS] [IRS] [Integrin_b_cyt ] by SMART
  • Other resources with information on 3G9W
  • Community annotation for 3G9W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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