3GBJ Motor Protein date Feb 19, 2009
title Crystal Structure Of The Motor Domain Of Kinesin Kif13b Boun
authors Y.Tong, L.Shen, Y.Shen, W.Tempel, C.H.Arrowsmith, A.M.Edwards, C.B J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium
compound source
Molecule: Kif13b Protein
Chain: A, B, C
Fragment: Unp Residues 4-351
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Kif13b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3-V2r Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic-Chis
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.229 86.520 94.948 90.00 106.80 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ADP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (3gbj.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3gbj.pdb2.gz) 94 Kb
  • Biological Unit Coordinates (3gbj.pdb3.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3GBJ
  • CSU: Contacts of Structural Units for 3GBJ
  • Likely Quarternary Molecular Structure file(s) for 3GBJ
  • Structure Factors (1354 Kb)
  • Retrieve 3GBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GBJ from S2C, [Save to disk]
  • Re-refined 3gbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GBJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gbj_C] [3gbj] [3gbj_B] [3gbj_A]
  • SWISS-PROT database: [Q9NQT8]
  • Domain organization of [KI13B_HUMAN] by SWISSPFAM
  • Domain found in 3GBJ: [KISc ] by SMART
    • Other resources with information on 3GBJ
  • Community annotation for 3GBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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