3GDQ Chaperone date Feb 24, 2009
title Crystal Structure Of The Human 70kda Heat Shock Protein 1-Li Domain In Complex With Adp And Inorganic Phosphate
authors M.Wisniewska, M.Moche, C.H.Arrowsmith, H.Berglund, C.Bountra, R.C L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, L.Lehtio, M.E P.Nordlund, T.Nyman, C.Persson, J.Sagemark, P.Schutz, M.Siponen, A.G.Thorsell, L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Welin, H.Schueler, Structural Genomics Consortium (Sgc)
compound source
Molecule: Heat Shock 70 Kda Protein 1-Like
Chain: A
Fragment: Atpase Domain
Synonym: Heat Shock 70 Kda Protein 1l, Heat Shock 70 Kda Pr Hom, Hsp70-Hom;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hspa1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.070 70.700 97.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ADP, GOL, MN, PO4 BindingDB enzyme
Primary referenceCrystal structures of the ATPase domains of four human Hsp70 isoforms: HSPA1L/Hsp70-hom, HSPA2/Hsp70-2, HSPA6/Hsp70B', and HSPA5/BiP/GRP78., Wisniewska M, Karlberg T, Lehtio L, Johansson I, Kotenyova T, Moche M, Schuler H, PLoS One. 2010 Jan 11;5(1):e8625. PMID:20072699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (3gdq.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3GDQ
  • CSU: Contacts of Structural Units for 3GDQ
  • Likely Quarternary Molecular Structure file(s) for 3GDQ
  • Structure Factors (646 Kb)
  • Retrieve 3GDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GDQ from S2C, [Save to disk]
  • Re-refined 3gdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GDQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GDQ, from MSDmotif at EBI
  • Fold representative 3gdq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gdq] [3gdq_A]
  • SWISS-PROT database: [P34931]
  • Domain organization of [HS71L_HUMAN] by SWISSPFAM
  • Other resources with information on 3GDQ
  • Community annotation for 3GDQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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