3GEB Hydrolase date Feb 25, 2009
title Crystal Structure Of Edeya2
authors S.J.Kim
compound source
Molecule: Eyes Absent Homolog 2
Chain: A, B, C, D
Fragment: C-Terminal Domain
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: I 4
R_factor 0.171 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.612 183.612 120.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (3geb.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3geb.pdb2.gz) 43 Kb
  • Biological Unit Coordinates (3geb.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (3geb.pdb4.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3GEB
  • CSU: Contacts of Structural Units for 3GEB
  • Likely Quarternary Molecular Structure file(s) for 3GEB
  • Structure Factors (667 Kb)
  • Retrieve 3GEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GEB from S2C, [Save to disk]
  • Re-refined 3geb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GEB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GEB, from MSDmotif at EBI
  • Fold representative 3geb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3geb] [3geb_D] [3geb_C] [3geb_A] [3geb_B]
  • SWISS-PROT database: [O00167]
  • Domain organization of [EYA2_HUMAN] by SWISSPFAM
  • Other resources with information on 3GEB
  • Community annotation for 3GEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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