3GFG Oxidoreductase date Feb 26, 2009
title Structure Of Putative Oxidoreductase Yvaa From Bacillus Subt Triclinic Form
authors U.A.Ramagopal, R.Toro, M.Gilmore, S.Chang, S.K.Burley, S.C.Almo, N Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Uncharacterized Oxidoreductase Yvaa
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 3-358
Engineered: Yes
 Organism_scientific: Bacillus Subtilis Subsp. Subtilis
Organism_taxid: 224308
Strain: 168
Gene: Bsu33530, Yvaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx4(Bc)
symmetry Space Group: P 1
R_factor 0.182 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.931 92.135 187.589 95.31 94.19 95.21
method X-Ray Diffractionresolution 2.59 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (640 Kb) [Save to disk]
  • Biological Unit Coordinates (3gfg.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (3gfg.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (3gfg.pdb3.gz) 114 Kb
  • Biological Unit Coordinates (3gfg.pdb4.gz) 112 Kb
  • Biological Unit Coordinates (3gfg.pdb5.gz) 110 Kb
  • Biological Unit Coordinates (3gfg.pdb6.gz) 108 Kb
  • CSU: Contacts of Structural Units for 3GFG
  • Likely Quarternary Molecular Structure file(s) for 3GFG
  • Structure Factors (2319 Kb)
  • Retrieve 3GFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GFG from S2C, [Save to disk]
  • Re-refined 3gfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GFG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GFG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gfg_F] [3gfg_L] [3gfg_K] [3gfg_I] [3gfg] [3gfg_G] [3gfg_C] [3gfg_D] [3gfg_H] [3gfg_E] [3gfg_J] [3gfg_A] [3gfg_B]
  • SWISS-PROT database: [O32223]
  • Domain organization of [YVAA_BACSU] by SWISSPFAM
    • Other resources with information on 3GFG
  • Community annotation for 3GFG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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