OCA Atlas for 3GJF

3GJF

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, E		cellular response to iron io...

Primary reference

Rational development of high-affinity T-cell receptor-like antibodies., Stewart-Jones G, Wadle A, Hombach A, Shenderov E, Held G, Fischer E, Kleber S, Stenner-Liewen F, Bauer S, McMichael A, Knuth A, Abken H, Hombach AA, Cerundolo V, Jones EY, Renner C, Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5784-8. Epub 2009 Mar 23. PMID:19307587

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]

Biological Unit Coordinates (3gjf.pdb1.gz) 145 Kb

Biological Unit Coordinates (3gjf.pdb2.gz) 144 Kb

CSU: Contacts of Structural Units for 3GJF

Likely Quarternary Molecular Structure file(s) for 3GJF

Structure Factors (1131 Kb)

Retrieve 3GJF in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3GJF from S2C, [Save to disk]

Re-refined 3gjf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GJF in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gjf] [3gjf_A] [3gjf_B] [3gjf_C] [3gjf_D] [3gjf_E] [3gjf_F] [3gjf_H] [3gjf_K] [3gjf_L] [3gjf_M]

SWISS-PROT database: [P01892] [P61769]

Domains found in 3GJF: [IG_like] [IGc1] [IGv ] by SMART

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