3GM8	Hydrolase	date	Mar 13, 2009
title	Crystal Structure Of A Beta-Glycosidase From Bacteroides Vul
authors	J.B.Bonanno, M.Rutter, K.T.Bain, M.Iizuka, S.Ozyurt, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound		source
Molecule: Glycoside Hydrolase Family 2, Candidate Beta-Glyc Chain: A Ec: 3.2.1.- Engineered: Yes		Organism_scientific: Bacteroides Vulgatus Organism_taxid: 435590 Strain: Atcc 8482 Gene: Bvu_0391 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet26
symmetry	Space Group: C 2 2 21	R_factor 0.226 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.754 193.348 190.667 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	GOL	enzyme	Hydrolase E.C.3.2.1 BRENDA
Gene	BVU
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (3gm8.pdb1.gz) 127 Kb LPC: Ligand-Protein Contacts for 3GM8 CSU: Contacts of Structural Units for 3GM8 Likely Quarternary Molecular Structure file(s) for 3GM8 Structure Factors (2117 Kb) Retrieve 3GM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GM8 from S2C, [Save to disk] Re-refined 3gm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GM8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GM8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GM8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gm8] [3gm8_A] SWISS-PROT database: [A6KXE5] Domain organization of [A6KXE5_BACV8] by SWISSPFAM

Other resources with information on 3GM8

Community annotation for 3GM8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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