3GMI Structural Genomics, Unknown Function date Mar 13, 2009
title Crystal Structure Of A Protein Of Unknown Function From Methanocaldococcus Jannaschii
authors R.Zhang, C.Hatzos, L.Freeman, A.Joachimiak, Midwest Center For S Genomics (Mcsg)
compound source
Molecule: Upf0348 Protein Mj0951
Chain: A
Engineered: Yes
 Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 243232
Strain: Dsm 2661
Gene: Gi:1591618, Mj0951
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.935 73.988 85.024 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand MLI enzyme
note 3GMI is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3gmi.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3GMI
  • CSU: Contacts of Structural Units for 3GMI
  • Likely Quarternary Molecular Structure file(s) for 3GMI
  • Structure Factors (272 Kb)
  • Retrieve 3GMI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GMI from S2C, [Save to disk]
  • Re-refined 3gmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3GMI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3GMI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GMI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gmi_A] [3gmi]
  • SWISS-PROT database: [Q58361]
  • Domain organization of [Y951_METJA] by SWISSPFAM
    • Other resources with information on 3GMI
  • Community annotation for 3GMI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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