3GMW Protein Binding date Mar 15, 2009
title Crystal Structure Of Beta-Lactamse Inhibitory Protein-I (Bli Complex With Tem-1 Beta-Lactamase
authors D.C.Lim, M.Gretes, N.C.J.Strynadka
compound source
Molecule: B-Lactamase
Chain: A, C
Engineered: Yes
Organism_scientific: Escherichia Sp. Sflu5
Organism_taxid: 299586
Strain: Cb86134
Gene: Amp, Bla
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc118

Molecule: Beta-Lactamase Inhibitory Protein Blip-I
Chain: B, D
Engineered: Yes

Organism_scientific: Streptomyces Exfoliatus
Organism_common: Streptomyces Hydrogenans
Organism_taxid: 1905
Strain: Smf19
Gene: Blia
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a(+)
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.418 48.757 106.137 103.24 91.29 90.18
method X-Ray Diffractionresolution 2.10 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceInsights into Positive and Negative Requirements for Protein-Protein Interactions by Crystallographic Analysis of the beta-Lactamase Inhibitory Proteins BLIP, BLIP-I, and BLP., Gretes M, Lim DC, Jensen SE, Kang SG, Lee KJ, Strynadka NC, J Mol Biol. 2009 Mar 28. PMID:19332077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3gmw.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3gmw.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3GMW
  • CSU: Contacts of Structural Units for 3GMW
  • Likely Quarternary Molecular Structure file(s) for 3GMW
  • Structure Factors (818 Kb)
  • Retrieve 3GMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GMW from S2C, [Save to disk]
  • Re-refined 3gmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GMW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gmw_A] [3gmw_D] [3gmw_B] [3gmw_C] [3gmw]
  • SWISS-PROT database: [A5PHA6] [Q9KJ90]
  • Domain organization of [A5PHA6_9ESCH] [Q9KJ90_STREX] by SWISSPFAM
  • Other resources with information on 3GMW
  • Community annotation for 3GMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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