3GPH Oxidoreductase date Mar 23, 2009
title Human Cytochrome P450 2e1 In Complex With Omega-Imidazolyl-D Acid
authors P.R.Porubsky, K.P.Battaile, E.E.Scott
compound source
Molecule: Cytochrome P450 2e1
Chain: A, B
Fragment: Unp Residues 32-493
Synonym: Cypiie1, P450-J
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2e, Cyp2e1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2e1dh
symmetry Space Group: P 43
R_factor 0.212 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.709 70.709 222.823 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand HEM, OID BindingDB enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman cytochrome P450 2E1 structures with fatty acid analogs reveal a previously unobserved binding mode., Porubsky PR, Battaile KP, Scott EE, J Biol Chem. 2010 May 12. PMID:20463018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (3gph.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3gph.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3GPH
  • CSU: Contacts of Structural Units for 3GPH
  • Structure Factors (440 Kb)
  • Retrieve 3GPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GPH from S2C, [Save to disk]
  • Re-refined 3gph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GPH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3GPH, from MSDmotif at EBI
  • Fold representative 3gph from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gph_A] [3gph_B] [3gph]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3GPH with the sequences similar proteins can be viewed for 3GPH's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3GPH
  • Community annotation for 3GPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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