3GPH Oxidoreductase date Mar 23, 2009
title Human Cytochrome P450 2e1 In Complex With Omega-Imidazolyl-D Acid
authors P.R.Porubsky, K.P.Battaile, E.E.Scott
compound source
Molecule: Cytochrome P450 2e1
Chain: A, B
Fragment: Unp Residues 32-493
Synonym: Cypiie1, P450-J
Ec: 1.14.14.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2e, Cyp2e1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2e1dh
symmetry Space Group: P 43
R_factor 0.212 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.709 70.709 222.823 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand HEM, OID BindingDB enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHuman cytochrome P450 2E1 structures with fatty acid analogs reveal a previously unobserved binding mode., Porubsky PR, Battaile KP, Scott EE, J Biol Chem. 2010 May 12. PMID:20463018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3gph.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3gph.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3GPH
  • CSU: Contacts of Structural Units for 3GPH
  • Structure Factors (440 Kb)
  • Retrieve 3GPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GPH from S2C, [Save to disk]
  • Re-refined 3gph structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GPH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GPH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gph_A] [3gph_B] [3gph]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3GPH
  • Community annotation for 3GPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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