3GQC Transferase Dna date Mar 24, 2009
title Structure Of Human Rev1-Dna-Dntp Ternary Complex
authors M.K.Swan, A.K.Aggarwal
compound source
Molecule: Dna Repair Protein Rev1
Chain: A, B, C, D
Fragment: Unp Residues 330-833
Synonym: Rev1-Like Terminal Deoxycytidyl Transferase, Alpha Binding Protein 80, Aibp80;
Ec: 2.7.7.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rev1, Rev1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2566
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb4se110

Molecule: 5'-D(Aptpcpcptpcpcpcpcptpap(Doc))-3'
Chain: E, G, I, K
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Dna

Molecule: 5'-D(Tpapapgpgptpapgpgpgpgpapgpgpa
Chain: F, H, J, L
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Dna
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.436 172.780 129.192 90.00 90.65 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand DCP, DOC, MG enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the human Rev1-DNA-dNTP ternary complex., Swan MK, Johnson RE, Prakash L, Prakash S, Aggarwal AK, J Mol Biol. 2009 Jul 24;390(4):699-709. Epub 2009 May 21. PMID:19464298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • Biological Unit Coordinates (3gqc.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (3gqc.pdb2.gz) 80 Kb
  • Biological Unit Coordinates (3gqc.pdb3.gz) 79 Kb
  • Biological Unit Coordinates (3gqc.pdb4.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 3GQC
  • CSU: Contacts of Structural Units for 3GQC
  • Likely Quarternary Molecular Structure file(s) for 3GQC
  • Structure Factors (628 Kb)
  • Retrieve 3GQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3GQC from S2C, [Save to disk]
  • Re-refined 3gqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3GQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3GQC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3GQC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3gqc] [3gqc_F] [3gqc_A] [3gqc_E] [3gqc_C] [3gqc_I] [3gqc_J] [3gqc_B] [3gqc_K] [3gqc_H] [3gqc_G] [3gqc_L] [3gqc_D]
  • SWISS-PROT database: [Q9UBZ9]
  • Domain organization of [REV1_HUMAN] by SWISSPFAM
  • Other resources with information on 3GQC
  • Community annotation for 3GQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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