3GVP	Hydrolase	date	Mar 31, 2009
title	Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
authors	M.I.Siponen, M.Wisniewska, C.H.Arrowsmith, H.Berglund, C.Bountra R.Collins, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammar A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, L.Lehtio, M.M P.Nordlund, T.Nyman, C.Persson, J.Sagemark, P.Schutz, A.G.Thorse L.Tresaugues, S.Van Den Berg, J.Weigelt, M.Welin, H.Schueler
compound		source
Molecule: Adenosylhomocysteinase 3 Chain: A, B, C, D Fragment: Unp Residues 175-607 Synonym: Adohcyase 3, S-Adenosyl-L-Homocysteine Hydrolase 3 Adenosylhomocysteine Hydrolase-Like Protein 2; Ec: 3.3.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ahcyl2, Kiaa0828 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 41 21 2	R_factor 0.182 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 164.188 164.188 184.614 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	NAD	enzyme	Hydrolase E.C.3.3.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk] Biological Unit Coordinates (3gvp.pdb1.gz) 279 Kb LPC: Ligand-Protein Contacts for 3GVP CSU: Contacts of Structural Units for 3GVP Likely Quarternary Molecular Structure file(s) for 3GVP Structure Factors (1790 Kb) Retrieve 3GVP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3GVP from S2C, [Save to disk] Re-refined 3gvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GVP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3GVP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3GVP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gvp_A] [3gvp_C] [3gvp_D] [3gvp_B] [3gvp] SWISS-PROT database: [Q96HN2] Domain organization of [SAHH3_HUMAN] by SWISSPFAM Domains found in 3GVP: [AdoHcyase] [AdoHcyase_NAD ] by SMART

Other resources with information on 3GVP

Community annotation for 3GVP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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