OCA Atlas for 3GZN

3GZN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

B39, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C
D, B
I, J

Primary reference

Substrate-assisted inhibition of ubiquitin-like protein-activating enzymes: the NEDD8 E1 inhibitor MLN4924 forms a NEDD8-AMP mimetic in situ., Brownell JE, Sintchak MD, Gavin JM, Liao H, Bruzzese FJ, Bump NJ, Soucy TA, Milhollen MA, Yang X, Burkhardt AL, Ma J, Loke HK, Lingaraj T, Wu D, Hamman KB, Spelman JJ, Cullis CA, Langston SP, Vyskocil S, Sells TB, Mallender WD, Visiers I, Li P, Claiborne CF, Rolfe M, Bolen JB, Dick LR, Mol Cell. 2010 Jan 15;37(1):102-11. PMID:20129059

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]

Biological Unit Coordinates (3gzn.pdb1.gz) 162 Kb

Biological Unit Coordinates (3gzn.pdb2.gz) 161 Kb

LPC: Ligand-Protein Contacts for 3GZN

CSU: Contacts of Structural Units for 3GZN

Structure Factors (1127 Kb)

Retrieve 3GZN in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3GZN from S2C, [Save to disk]

Re-refined 3gzn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3GZN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3gzn] [3gzn_A] [3gzn_B] [3gzn_C] [3gzn_D] [3gzn_I] [3gzn_J]

SWISS-PROT database:

Domains found in 3GZN: [E2_bind] [UBQ ] by SMART

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