3HA6 Transferase date May 01, 2009
title Crystal Structure Of Aurora A In Complex With Tpx2 And Compo
authors B.Zhao, M.A.Clark
compound source
Molecule: Serinethreonine-Protein Kinase 6
Chain: A
Fragment: Unp Residues 125-391
Synonym: Aurora Kinase A, Aurora-A, Serinethreonine Kinase Auroraipl1-Related Kinase 1, Aurora-Related Kinase 1, Hark Tumor-Amplified Kinase;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aik, Ark1, Aura, Aurka, Btak, Stk15, Stk6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17 Tev Aurora A 125-391

Molecule: Targeting Protein For Xklp2
Chain: B
Fragment: Unp Residues 1-43
Synonym: Restricted Expression Proliferation-Associated Pro P100, Differentially Expressed In Cancerous And Non-Cancero Cells 2, Dil-2, Protein Fls353, Hepatocellular Carcinoma-As Antigen 519;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C20orf1, C20orf2, Dil2, Hca519, Tpx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest17 Tev Aurora A 125-391
symmetry Space Group: P 31 2 1
R_factor 0.224 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.464 86.464 143.345 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.36 Å
ligand 2JZ, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, synthesis and selection of DNA-encoded small-molecule libraries., Clark MA, Acharya RA, Arico-Muendel CC, Belyanskaya SL, Benjamin DR, Carlson NR, Centrella PA, Chiu CH, Creaser SP, Cuozzo JW, Davie CP, Ding Y, Franklin GJ, Franzen KD, Gefter ML, Hale SP, Hansen NJ, Israel DI, Jiang J, Kavarana MJ, Kelley MS, Kollmann CS, Li F, Lind K, Mataruse S, Medeiros PF, Messer JA, Myers P, O'Keefe H, Oliff MC, Rise CE, Satz AL, Skinner SR, Svendsen JL, Tang L, van Vloten K, Wagner RW, Yao G, Zhao B, Morgan BA, Nat Chem Biol. 2009 Sep;5(9):647-54. Epub 2009 Aug 2. PMID:19648931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (3ha6.pdb1.gz) 210 Kb
  • Biological Unit Coordinates (3ha6.pdb2.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 3HA6
  • CSU: Contacts of Structural Units for 3HA6
  • Structure Factors (351 Kb)
  • Retrieve 3HA6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HA6 from S2C, [Save to disk]
  • Re-refined 3ha6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HA6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HA6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HA6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e3ha6, region A:483-578 [Jmol] [rasmolscript] [script source]
  • Fold representative 3ha6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ha6_B] [3ha6_A] [3ha6]
  • SWISS-PROT database: [O14965] [Q9ULW0]
  • Domain organization of [STK6_HUMAN] [TPX2_HUMAN] by SWISSPFAM
  • Domain found in 3HA6: [S_TKc ] by SMART
  • Other resources with information on 3HA6
  • Community annotation for 3HA6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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