3HB9	Ligase	date	May 04, 2009
title	Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mu
authors	L.Tong, L.P.C.Yu
compound		source
Molecule: Pyruvate Carboxylase Chain: A, B, C, D Engineered: Yes Mutation: Yes		Organism_scientific: Staphylococcus Aureus Subsp. Aureus Mu Organism_taxid: 158878 Gene: Pyca, Pyruvate Carboxylase, Sav1114 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Star(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.566 256.763 126.485 90.00 109.65 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	ADP, BTI, MN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	A symmetrical tetramer for S. aureus pyruvate carboxylase in complex with coenzyme A., Yu LP, Xiang S, Lasso G, Gil D, Valle M, Tong L, Structure. 2009 Jun 10;17(6):823-32. PMID:19523900

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1407 Kb) [Save to disk] Biological Unit Coordinates (3hb9.pdb1.gz) 1368 Kb LPC: Ligand-Protein Contacts for 3HB9 CSU: Contacts of Structural Units for 3HB9 Likely Quarternary Molecular Structure file(s) for 3HB9 Structure Factors (981 Kb) Retrieve 3HB9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HB9 from S2C, [Save to disk] Re-refined 3hb9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HB9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HB9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HB9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hb9] [3hb9_C] [3hb9_D] [3hb9_A] [3hb9_B] SWISS-PROT database: [Q99UY8] Domain organization of [Q99UY8_STAAM] by SWISSPFAM Domain found in 3HB9: [Biotin_carb_C ] by SMART

Other resources with information on 3HB9

Community annotation for 3HB9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---