3HDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	2NC, ABA, AIB, NLE, SMC BindingDB	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Protein conformational dynamics in the mechanism of HIV-1 protease catalysis., Torbeev VY, Raghuraman H, Hamelberg D, Tonelli M, Westler WM, Perozo E, Kent SB, Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):20982-7. Epub 2011 Dec 8. PMID:22158985

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (3hdk.pdb1.gz) 17 Kb Biological Unit Coordinates (3hdk.pdb2.gz) 19 Kb Biological Unit Coordinates (3hdk.pdb3.gz) 34 Kb LPC: Ligand-Protein Contacts for 3HDK CSU: Contacts of Structural Units for 3HDK Structure Factors (167 Kb) Retrieve 3HDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HDK from S2C, [Save to disk] Re-refined 3hdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hdk] [3hdk_A] [3hdk_B] SWISS-PROT database:

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