3HK0 Signaling Protein date May 22, 2009
title Crystal Structure Of The Ra And Ph Domains Of Grb10
authors S.R.Hubbard, R.S.Depetris, J.Wu
compound source
Molecule: Growth Factor Receptor-Bound Protein 10
Chain: A, B
Fragment: Ras-Associating Domain, Ph Domain, Unp Residues 1
Synonym: Grb10 Adapter Protein, Insulin Receptor-Binding Pr Ir;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grb10, Grbir, Kiaa0207
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14b
symmetry Space Group: C 1 2 1
R_factor 0.230 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.875 48.884 92.217 90.00 114.14 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand SCN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional studies of the Ras-associating and pleckstrin-homology domains of Grb10 and Grb14., Depetris RS, Wu J, Hubbard SR, Nat Struct Mol Biol. 2009 Aug;16(8):833-9. Epub 2009 Aug 2. PMID:19648926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3hk0.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3HK0
  • CSU: Contacts of Structural Units for 3HK0
  • Structure Factors (127 Kb)
  • Retrieve 3HK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HK0 from S2C, [Save to disk]
  • Re-refined 3hk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HK0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HK0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hk0_A] [3hk0_B] [3hk0]
  • SWISS-PROT database: [Q13322]
  • Domain organization of [GRB10_HUMAN] by SWISSPFAM
  • Domains found in 3HK0: [PH] [RA ] by SMART
  • Other resources with information on 3HK0
  • Community annotation for 3HK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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