3HMX Cytokine Immune System date May 29, 2009
title Crystal Structure Of Ustekinumab Fabil-12 Complex
authors J.Luo
compound source
Molecule: Interleukin-12 Subunit Beta
Chain: A
Synonym: Il-12b, Il-12 Subunit P40, Cytotoxic Lymphocyte Ma Factor 40 Kda Subunit, Clmf P40, Nk Cell Stimulatory Factor Nksf2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il12b, Nksf2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Interleukin-12 Subunit Alpha
Chain: B
Synonym: Il-12a, Il-12 Subunit P35, Cytotoxic Lymphocyte Ma Factor 35 Kda Subunit, Clmf P35, Nk Cell Stimulatory Factor Nksf1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il12a, Nksf1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Ustekinumab Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab

Molecule: Ustekinumab Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.092 116.435 182.781 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMA, MAN, NAG enzyme
note 3HMX is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of inter...
  • positive regulation of inter...

  • B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmx.pdb1.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 3HMX
  • CSU: Contacts of Structural Units for 3HMX
  • Structure Factors (171 Kb)
  • Retrieve 3HMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMX from S2C, [Save to disk]
  • Re-refined 3hmx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HMX, from MSDmotif at EBI
  • Fold representative 3hmx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmx_L] [3hmx_H] [3hmx_A] [3hmx_B] [3hmx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3HMX: [IGc1] [IGc2] [IGv ] by SMART
  • Other resources with information on 3HMX
  • Community annotation for 3HMX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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