3HMX Cytokine Immune System date May 29, 2009
title Crystal Structure Of Ustekinumab Fabil-12 Complex
authors J.Luo
compound source
Molecule: Interleukin-12 Subunit Beta
Chain: A
Synonym: Il-12b, Il-12 Subunit P40, Cytotoxic Lymphocyte Ma Factor 40 Kda Subunit, Clmf P40, Nk Cell Stimulatory Factor Nksf2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il12b, Nksf2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Interleukin-12 Subunit Alpha
Chain: B
Synonym: Il-12a, Il-12 Subunit P35, Cytotoxic Lymphocyte Ma Factor 35 Kda Subunit, Clmf P35, Nk Cell Stimulatory Factor Nksf1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il12a, Nksf1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Ustekinumab Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab

Molecule: Ustekinumab Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
Other_details: Papain Digested From Mab
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.092 116.435 182.781 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMA, MAN, NAG enzyme
note 3HMX is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • positive regulation of inter...
  • positive regulation of inter...

  • B


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (3hmx.pdb1.gz) 307 Kb
  • LPC: Ligand-Protein Contacts for 3HMX
  • CSU: Contacts of Structural Units for 3HMX
  • Structure Factors (171 Kb)
  • Retrieve 3HMX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HMX from S2C, [Save to disk]
  • Re-refined 3hmx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HMX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HMX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3HMX, from MSDmotif at EBI
  • Fold representative 3hmx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hmx_L] [3hmx_H] [3hmx_A] [3hmx_B] [3hmx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3HMX with the sequences similar proteins can be viewed for 3HMX's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3HMX
  • Community annotation for 3HMX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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