3HO8 Ligase date Jun 01, 2009
title Crystal Structure Of S. Aureus Pyruvate Carboxylase In Compl Coenzyme A
authors L.Tong, L.P.C.Yu
compound source
Molecule: Pyruvate Carboxylase
Chain: A, D, C, B
Engineered: Yes
Organism_scientific: Staphylococcus Aureus Subsp. Aureus Mu
Organism_taxid: 158878
Gene: Pyca, Pyruvate Carboxylase, Sav1114
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.264 R_Free 0.328
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.586 164.466 373.346 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand BTI, COA, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA symmetrical tetramer for S. aureus pyruvate carboxylase in complex with coenzyme A., Yu LP, Xiang S, Lasso G, Gil D, Valle M, Tong L, Structure. 2009 Jun 10;17(6):823-32. PMID:19523900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1053 Kb) [Save to disk]
  • Biological Unit Coordinates (3ho8.pdb1.gz) 1042 Kb
  • LPC: Ligand-Protein Contacts for 3HO8
  • CSU: Contacts of Structural Units for 3HO8
  • Likely Quarternary Molecular Structure file(s) for 3HO8
  • Structure Factors (1939 Kb)
  • Retrieve 3HO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HO8 from S2C, [Save to disk]
  • Re-refined 3ho8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HO8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HO8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ho8_B] [3ho8] [3ho8_C] [3ho8_D] [3ho8_A]
  • SWISS-PROT database: [Q99UY8]
  • Domain organization of [Q99UY8_STAAM] by SWISSPFAM
  • Domain found in 3HO8: [Biotin_carb_C ] by SMART
  • Other resources with information on 3HO8
  • Community annotation for 3HO8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science